PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_42407.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 85aa    MW: 9548.63 Da    PI: 7.8609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_42407.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.14.2e-086584222
                      AP2  2 gykGVrwdkkrgrWvAeIrdp 22
                             +y+GVr+++ +g+++AeIrdp
  Rsa1.0_42407.1_g00001.1 65 HYRGVRRRP-WGKYAAEIRDP 84
                             7********.**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-96485IPR001471AP2/ERF domain
PROSITE profilePS5103211.0346585IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-56585IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASSQDQSAL DLITQHLLTD FPSLETFVSS IHQSTTSTLS QRKPSLATIS VPTTAVVVQE  60
DDHRHYRGVR RRPWGKYAAE IRDPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013671087.12e-54PREDICTED: ethylene-responsive transcription factor ERF105-like
RefseqXP_013607145.12e-54PREDICTED: ethylene-responsive transcription factor ERF105
SwissprotQ8VY902e-45EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A078C4D72e-54A0A078C4D7_BRANA; BnaC09g27360D protein
TrEMBLA0A078EXX32e-54A0A078EXX3_BRANA; BnaA10g05780D protein
TrEMBLA0A0D3EA072e-54A0A0D3EA07_BRAOL; Uncharacterized protein
STRINGBra035732.1-P6e-54(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-46ERF family protein